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Revealing Hidden Biology by Identifying Ligands for the ykkC Orphan Riboswitches

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개인저자Sherlock, Madeline Elizabeth.
단체저자명Yale University.
서명/저자사항Revealing Hidden Biology by Identifying Ligands for the ykkC Orphan Riboswitches.
발행사항[S.l.] : Yale University., 2018
발행사항Ann Arbor : ProQuest Dissertations & Theses, 2018
형태사항299 p.
소장본 주기School code: 0265.
ISBN9780438194779
일반주기 Source: Dissertation Abstracts International, Volume: 79-12(E), Section: B.
Adviser: Ronald R. Breaker.
요약Riboswitches are non-coding RNAs that bind a small molecule or ion ligand to regulate gene expression. The cognate ligands have been identified for dozens of riboswitch classes, but the ligand identities are unknown for many promising structured
요약My colleagues found that guanidine induces expression of a riboswitch- lacZ reporter gene fusion in a large screen of various growth conditions. They collected additional evidence implicating guanidine as the elusive ligand for ykkC riboswitches
요약I subsequently determined that representatives of two other RNA motifs, called mini-ykkC and ykkC-III, also bind guanidine in vitro. All three guanidine-binding RNA motifs have similar downstream gene associations, and therefore these three dist
요약While the majority of ykkC RNAs selectively bind guanidine, I found that the remaining 30% of ykkC RNAs do not bind guanidine and carry nucleotide changes in their binding pockets to allow recognition of a different ligand. I analyzed the consen
요약I discovered that the first variant class selectively binds guanosine tetraphosphate (ppGpp), a bacterial alarmone derived from the ribonucleotide GTP. The ppGpp riboswitch class primarily regulates transcription of genes involved in branched-ch
일반주제명Biochemistry.
Microbiology.
Molecular biology.
언어영어
기본자료 저록Dissertation Abstracts International79-12B(E).
Dissertation Abstract International
대출바로가기http://www.riss.kr/pdu/ddodLink.do?id=T15000857

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