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020 ▼a 9780355832174
035 ▼a (MiAaPQ)AAI10688411
035 ▼a (MiAaPQ)berkeley:17658
040 ▼a MiAaPQ ▼c MiAaPQ ▼d 248032
0820 ▼a 575
1001 ▼a Desai, Anna Maria.
24510 ▼a Networks of Splice Factor Regulation by Unproductive Splicing Coupled With NMD.
260 ▼a [S.l.] : ▼b University of California, Berkeley., ▼c 2017
260 1 ▼a Ann Arbor : ▼b ProQuest Dissertations & Theses, ▼c 2017
300 ▼a 80 p.
500 ▼a Source: Dissertation Abstracts International, Volume: 79-08(E), Section: B.
500 ▼a Adviser: Steven E. Brenner.
5021 ▼a Thesis (Ph.D.)--University of California, Berkeley, 2017.
506 ▼a This item is not available from ProQuest Dissertations & Theses.
520 ▼a Virtually all multi-exon genes undergo alternative splicing (AS) to generate multiple protein isoforms. Alternative splicing is regulated by splicing factors, such as the serine/arginine rich (SR) protein family and the heterogeneous nuclear rib
520 ▼a The NMD pathway has a role in preventing accumulation of erroneous transcripts with dominant negative phenotypes. During the pioneer round of translation, NMD recognizes mRNA transcripts with in-frame premature termination codons (PTCs) and degr
520 ▼a Approximately 18% of expressed genes are reported to be natural targets of NMD, yet it still remains unclear why the human genome would express mRNAs that are immediately degraded by the NMD pathway. It is especially intriguing that splicing fac
520 ▼a Regulation via alternative splicing coupled to NMD requires binding of a splicing factor to the regulated mRNA. CLIP-seq and related studies reveal that splicing factors bind abundantly to all transcripts of our selected 100 splicing factors. In
520 ▼a Dr. Courtney French, Dr. Hu, and I combined experimental data and a model for NMD mechanism to identify targets of NMD. I inhibited NMD in HeLa and GM12878 cells via knockdown of UPF1 and SMG6, two core NMD factors, and by exposure to cyclohexim
590 ▼a School code: 0028.
650 4 ▼a Genetics.
650 4 ▼a Biochemistry.
690 ▼a 0369
690 ▼a 0487
71020 ▼a University of California, Berkeley. ▼b Biological Science.
7730 ▼t Dissertation Abstracts International ▼g 79-08B(E).
773 ▼t Dissertation Abstract International
790 ▼a 0028
791 ▼a Ph.D.
792 ▼a 2017
793 ▼a English
85640 ▼u http://www.riss.kr/pdu/ddodLink.do?id=T14996763 ▼n KERIS
980 ▼a 201812 ▼f 2019
990 ▼a 관리자